§2024-12-14

¶Basic commands

• conda create - Create a new conda environment

  • conda create -n PY-3.10.15-R-4.4 python=3.10.15 r=4.4 -c conda-forge
  • create env for python-3.10.15 and R-4.4 from channel conda-forge

• conda activate - Activate a specific conda environment

  (base) alexlai@ApiServer:~$    <-- (base) under conda
  
  (base) alexlai@ApiServer:~$ conda activate PY-3.10.15-R-4.4
  (PY-3.10.15-R-4.4) alexlai@ApiServer:~$ conda deativate
  usage: conda [-h] [-v] [--no-plugins] [-V] COMMAND ...
  conda: error: argument COMMAND: invalid choice: 'deativate' (choose from 'activate', 'clean', 'commands', 'compare', 'config', 'create', 'deactivate', 'env', 'export', 'info', 'init', 'install', 'list', 'notices', 'package', 'build', 'content-trust', 'convert', 'debug', 'develop', 'doctor', 'index', 'inspect', 'metapackage', 'render', 'repoquery', 'skeleton', 'server', 'token', 'pack', 'repo', 'remove', 'uninstall', 'rename', 'run', 'search', 'update', 'upgrade')
  (PY-3.10.15-R-4.4) alexlai@ApiServer:~$ conda deactivate
  (base) alexlai@ApiServer:~$
  

• conda deactivate - Deactivate the current conda environment

• conda list - List all packages in the current conda environment

• conda install - Install a package in the current conda environment

• conda update - Update a package in the current conda environment

• conda remove - Remove a package from the current conda environment

• conda info - Display information about the current conda environment

• conda search - Search for a package in the conda repositories

• conda env export - Export the current conda environment to a file

• conda env create - Create a new conda environment from a file

¶advanced conda commands

conda config - Modify configuration settings for conda conda init - Initialize conda in the shell conda clean - Clean up conda packages and caches conda info --envs - List all conda environments on your system conda list --revisions - List all package revisions installed in the current environment conda create --name myenv --clone base - Create a new environment named "myenv" that is identical to the base environment conda update --all - Update all packages in the current environment conda install --file requirements.txt - Install packages listed in a specified text file conda env export --no-builds - Export the current environment, but exclude build information conda env remove --name myenv - Remove an environment named "myenv" conda index --update-cache - Update the local package cache conda create --name myenv --file spec-file.txt - Create a new environment named "myenv" and install packages listed in a specified text file conda create --name myenv --strict-channel-priority - Create a new environment named "myenv" with strict channel priority conda install --name myenv --channel conda-forge package-name - Install a package from a specific channel in a named environment conda install --name myenv --use-index-cache - Install packages using the index cache, rather than downloading from the internet conda list --json - Output the package list in json format conda info --json - Output information about the current environment in json format conda update --all --force-reinstall - Force the reinstallation of all packages in the current environment conda clean --dry-run - Perform a dry run of the clean command without removing any files conda config --add channels conda-forge - Add a new channel to the list of channels conda env export --from-history - Export the environment of the last command executed

§2024-12-28

1. list eniviroment

conda env list

This will show the environments that are still present.

2. remove enviroment

conda env remove --name your_env_name

For example:

(base) rstudio-server@Jetson:~/jupyterhub$ conda env list

# conda environments:
#
base                  *  /home/rstudio-server/anaconda3
RStudio                  /home/rstudio-server/anaconda3/envs/RStudio

(base) rstudio-server@Jetson:~$ conda env remove --name RStudio

Remove all packages in environment /home/rstudio-server/anaconda3/envs/RStudio:


## Package Plan ##

  environment location: /home/rstudio-server/anaconda3/envs/RStudio


The following packages will be REMOVED:

  _libgcc_mutex-0.1-main
  _openmp_mutex-5.1-51_gnu
  _r-mutex-1.0.1-anacondar_1
  alembic-1.7.5-pyhd3eb1b0_1
  alsa-lib-1.2.13-h86ecc28_0
  anyio-4.6.2-py313hd43f75c_0
  argon2-cffi-21.3.0-pyhd3eb1b0_0
  argon2-cffi-bindings-21.2.0-py313h998d150_0
  asttokens-2.0.5-pyhd3eb1b0_0
  async-lru-2.0.4-py313hd43f75c_0
  async_generator-1.10-pyhd3eb1b0_0
  attrs-24.3.0-py313hd43f75c_0
  babel-2.11.0-py313hd43f75c_0
  beautifulsoup4-4.12.3-py313hd43f75c_0
  binutils_impl_linux-aarch64-2.40-h4fb32a3_0
  blas-1.0-openblas
  bleach-6.2.0-py313hd43f75c_0
  blinker-1.6.2-py313hd43f75c_0
  brotli-1.0.9-h998d150_8
  brotli-bin-1.0.9-h998d150_8
  brotli-python-1.0.9-py313h419075a_8
  bwidget-1.9.16-h5eaa5a5_0
  bzip2-1.0.8-h998d150_6
  c-ares-1.34.4-h86ecc28_0
  ca-certificates-2024.12.14-hcefe29a_0
  cairo-1.18.2-h83712da_1
  certifi-2024.8.30-py313hd43f75c_0
  certipy-0.1.3-pyhd3eb1b0_0
  cffi-1.17.1-py313hcb1262d_0
  charset-normalizer-3.3.2-pyhd3eb1b0_0
  comm-0.2.1-py313hd43f75c_0
  configurable-http-proxy-4.6.0-hd43f75c_0
  contourpy-1.3.1-py313hb8fdbf2_0
  cryptography-43.0.3-py313h4f760a9_1
  curl-8.11.1-h6702fde_0
  cycler-0.11.0-pyhd3eb1b0_0
  cyrus-sasl-2.1.27-hf6b2984_7
  dbus-1.13.18-h821dc26_0
  debugpy-1.6.7-py313h419075a_0
  decorator-5.1.1-pyhd3eb1b0_0
  defusedxml-0.7.1-pyhd3eb1b0_0
  double-conversion-3.3.0-h2f0025b_0
  entrypoints-0.4-py313hd43f75c_0
  executing-0.8.3-pyhd3eb1b0_0
  expat-2.6.4-h419075a_0
  font-ttf-dejavu-sans-mono-2.37-hd3eb1b0_0
  font-ttf-inconsolata-2.001-hcb22688_0
  font-ttf-source-code-pro-2.030-hd3eb1b0_0
  font-ttf-ubuntu-0.83-h8b1ccd4_0
  fontconfig-2.15.0-h8dda3cd_1
  fonts-anaconda-1-h8fa9717_0
  fonts-conda-ecosystem-1-hd3eb1b0_0
  fonttools-4.51.0-py313h998d150_0
  freetype-2.12.1-hf0a5ef3_2
  fribidi-1.0.10-hfd63f10_0
  gcc_impl_linux-aarch64-14.2.0-hc4119dd_1
  gettext-0.21.0-h8e49294_2
  gfortran_impl_linux-aarch64-14.2.0-hddc744a_1
  glib-2.82.2-hc486b8e_0
  glib-tools-2.82.2-h78ca943_0
  graphite2-1.3.14-h22f4aa5_1
  greenlet-3.1.1-py313h419075a_0
  gsl-2.7.1-h504868b_1
  gxx_impl_linux-aarch64-14.2.0-h03d099d_1
  h11-0.14.0-py313hd43f75c_0
  harfbuzz-9.0.0-hbf49d6b_1
  httpcore-1.0.2-py313hd43f75c_0
  httpx-0.27.0-py313hd43f75c_0
  icu-75.1-hf9b3779_0
  idna-3.7-py313hd43f75c_0
  importlib-metadata-8.5.0-py313hd43f75c_0
  importlib_resources-6.4.0-py313hd43f75c_0
  ipykernel-6.29.5-pyh3099207_0
  ipython-8.30.0-py313hd43f75c_0
  jedi-0.19.2-py313hd43f75c_0
  jinja2-3.1.4-py313hd43f75c_1
  json5-0.9.25-py313hd43f75c_0
  jsonschema-4.23.0-py313hd43f75c_0
  jsonschema-specifications-2023.7.1-py313hd43f75c_0
  jupyter-lsp-2.2.5-pyhd8ed1ab_1
  jupyter_client-8.6.0-py313hd43f75c_0
  jupyter_core-5.7.2-py313hd43f75c_0
  jupyter_events-0.10.0-py313hd43f75c_0
  jupyter_server-2.14.2-pyhd8ed1ab_1
  jupyter_server_terminals-0.4.4-py313hd43f75c_1
  jupyter_telemetry-0.1.0-py_0
  jupyterhub-2.0.0-pyhd3eb1b0_0
  jupyterlab-4.3.4-pyhd8ed1ab_0
  jupyterlab_pygments-0.1.2-py_0
  jupyterlab_server-2.27.3-pyhd8ed1ab_1
  kernel-headers_linux-aarch64-4.14.214-h1cb168f_14
  kiwisolver-1.4.4-py313h419075a_0
  krb5-1.21.3-h2e2fba8_0
  lcms2-2.16-h922389a_0
  ld_impl_linux-aarch64-2.40-h48e3ba3_0
  lerc-4.0.0-h419075a_0
  libblas-3.9.0-26_linuxaarch64_openblas
  libbrotlicommon-1.0.9-h998d150_8
  libbrotlidec-1.0.9-h998d150_8
  libbrotlienc-1.0.9-h998d150_8
  libcblas-3.9.0-26_linuxaarch64_openblas
  libclang-cpp19.1-19.1.6-default_he324ac1_0
  libclang13-19.1.6-default_h4390ef5_0
  libcups-2.3.3-h405e4a8_4
  libcurl-8.11.1-h6702fde_0
  libdeflate-1.23-h5e3c512_0
  libdrm-2.4.124-h86ecc28_0
  libedit-3.1.20230828-h998d150_0
  libegl-1.7.0-hd24410f_2
  libev-4.33-hfd63f10_1
  libexpat-2.6.4-h5ad3122_0
  libffi-3.4.4-h419075a_1
  libgcc-14.2.0-he277a41_1
  libgcc-devel_linux-aarch64-14.2.0-h46490cb_101
  libgcc-ng-14.2.0-he9431aa_1
  libgfortran-14.2.0-he9431aa_1
  libgfortran-ng-14.2.0-he9431aa_1
  libgfortran5-14.2.0-hb6113d0_1
  libgl-1.7.0-hd24410f_2
  libglib-2.82.2-hc486b8e_0
  libglvnd-1.7.0-hd24410f_2
  libglx-1.7.0-hd24410f_2
  libgomp-14.2.0-he277a41_1
  libiconv-1.17-h31becfc_2
  libjpeg-turbo-3.0.3-h998d150_0
  liblapack-3.9.0-26_linuxaarch64_openblas
  libllvm19-19.1.6-h2edbd07_0
  liblzma-5.6.3-h86ecc28_1
  libmpdec-4.0.0-h998d150_0
  libnghttp2-1.64.0-hc8609a4_0
  libntlm-1.6-h2f4d8fa_0
  libopenblas-0.3.28-pthreads_h9d3fd7e_1
  libopengl-1.7.0-hd24410f_2
  libpciaccess-0.18-h31becfc_0
  libpng-1.6.44-hc4a20ef_0
  libpq-17.2-hd56632b_1
  libsanitizer-14.2.0-hff26f3d_1
  libsodium-1.0.18-hfd63f10_0
  libsqlite-3.47.2-h5eb1b54_0
  libssh2-1.11.1-ha41c0db_0
  libstdcxx-14.2.0-h3f4de04_1
  libstdcxx-devel_linux-aarch64-14.2.0-h46490cb_101
  libstdcxx-ng-14.2.0-hf1166c9_1
  libtiff-4.7.0-h88f7998_3
  libuuid-2.38.1-hb4cce97_0
  libuv-1.49.2-h86ecc28_0
  libwebp-base-1.4.0-h31becfc_0
  libxcb-1.17.0-h262b8f6_0
  libxkbcommon-1.7.0-h46f2afe_1
  libxml2-2.13.5-h2e0c361_1
  libxslt-1.1.41-h4b4cad1_0
  libzlib-1.3.1-h86ecc28_2
  make-4.2.1-hfd63f10_1
  mako-1.2.3-py313hd43f75c_0
  markupsafe-2.1.3-py313h998d150_0
  matplotlib-3.10.0-py313h1258fbd_0
  matplotlib-base-3.10.0-py313h16bfeab_0
  matplotlib-inline-0.1.6-py313hd43f75c_0
  mistune-2.0.4-py313hd43f75c_0
  mysql-common-9.0.1-h3f5c77f_3
  mysql-libs-9.0.1-h11569fd_3
  nbclient-0.8.0-py313hd43f75c_0
  nbconvert-core-7.16.4-pyhff2d567_2
  nbformat-5.10.4-py313hd43f75c_0
  ncurses-6.5-hcccb83c_1
  nest-asyncio-1.6.0-py313hd43f75c_0
  nodejs-22.12.0-h8374285_0
  notebook-7.3.1-pyhd8ed1ab_0
  notebook-shim-0.2.4-pyhd8ed1ab_1
  numpy-2.2.1-py313haaed576_0
  oauthlib-3.2.0-pyhd3eb1b0_1
  openjpeg-2.5.2-ha2c532c_0
  openldap-2.6.9-h30c48ee_0
  openssl-3.4.0-h86ecc28_0
  overrides-7.4.0-py313hd43f75c_0
  packaging-24.2-py313hd43f75c_0
  pamela-1.0.0-pyhd3eb1b0_0
  pandas-2.2.3-py313h7b4b6ea_1
  pandoc-2.12-hd43f75c_3
  pandocfilters-1.5.0-pyhd3eb1b0_0
  pango-1.54.0-hf175a2e_3
  parso-0.8.4-py313hd43f75c_0
  pcre2-10.44-h070dd5b_2
  pexpect-4.8.0-pyhd3eb1b0_3
  pillow-11.0.0-py313h8b7b215_0
  pip-24.2-py313hd43f75c_0
  pixman-0.44.2-h86a87f0_0
  platformdirs-3.10.0-py313hd43f75c_0
  prometheus_client-0.13.1-pyhd3eb1b0_0
  prompt-toolkit-3.0.43-py313hd43f75c_0
  prompt_toolkit-3.0.43-hd3eb1b0_0
  psutil-5.9.0-py313h998d150_0
  pthread-stubs-0.3-hfd63f10_1
  ptyprocess-0.7.0-pyhd3eb1b0_2
  pure_eval-0.2.2-pyhd3eb1b0_0
  pycparser-2.21-pyhd3eb1b0_0
  pycurl-7.45.3-py313h6ac735f_0
  pygments-2.15.1-py313hd43f75c_1
  pyjwt-2.9.0-py313hd43f75c_0
  pyopenssl-24.2.1-py313hd43f75c_0
  pyparsing-3.1.2-py313hd43f75c_0
  pyside6-6.8.1-py313h57f4686_0
  pysocks-1.7.1-py313hd43f75c_0
  python-3.13.1-h3e021d1_102_cp313
  python-dateutil-2.9.0post0-py313hd43f75c_2
  python-fastjsonschema-2.16.2-py313hd43f75c_0
  python-json-logger-3.2.1-py313hd43f75c_0
  python-tzdata-2023.3-pyhd3eb1b0_0
  python_abi-3.13-0_cp313
  pytz-2024.1-py313hd43f75c_0
  pyyaml-6.0.2-py313h998d150_0
  pyzmq-25.1.2-py313h419075a_0
  qhull-2020.2-hb8fdbf2_2
  qt6-main-6.8.1-h0d3cc05_0
  r-askpass-1.2.1-r44hdd76399_0
  r-assertthat-0.2.1-r44hc72bb7e_5
  r-backports-1.5.0-r44hc1cf72c_1
  r-base-4.4.2-h704e9fa_2
  r-base64enc-0.1_3-r44hc1cf72c_1007
  r-bit-4.5.0.1-r44hdd76399_0
  r-bit64-4.5.2-r44hdd76399_0
  r-blob-1.2.4-r44hc72bb7e_2
  r-boot-1.3_31-r44hc72bb7e_0
  r-broom-1.0.7-r44hc72bb7e_0
  r-bslib-0.8.0-r44hc72bb7e_0
  r-cachem-1.1.0-r44hc1cf72c_1
  r-callr-3.7.6-r44hc72bb7e_1
  r-caret-6.0_94-r44hc1cf72c_2
  r-cellranger-1.1.0-r44hc72bb7e_1007
  r-class-7.3_22-r44hc1cf72c_2
  r-cli-3.6.3-r44h6170684_1
  r-clipr-0.8.0-r44hc72bb7e_3
  r-clock-0.7.1-r44h6170684_0
  r-cluster-2.1.8-r44h6e524ba_0
  r-codetools-0.2_20-r44hc72bb7e_1
  r-colorspace-2.1_1-r44hc1cf72c_0
  r-commonmark-1.9.2-r44hdd76399_0
  r-conflicted-1.2.0-r44h785f33e_2
  r-cpp11-0.5.1-r44hc72bb7e_0
  r-crayon-1.5.3-r44hc72bb7e_1
  r-crul-1.5.0-r44h785f33e_0
  r-curl-6.0.1-r44h8829f0d_0
  r-data.table-1.15.4-r44h3c4d9d1_1
  r-dbi-1.2.3-r44hc72bb7e_1
  r-dbplyr-2.5.0-r44hc72bb7e_1
  r-diagram-1.6.5-r44ha770c72_3
  r-digest-0.6.37-r44h6170684_0
  r-dplyr-1.1.4-r44h6170684_1
  r-dtplyr-1.3.1-r44hc72bb7e_2
  r-e1071-1.7_16-r44h21d2c02_0
  r-ellipsis-0.3.2-r44hc1cf72c_3
  r-essentials-4.4-r44hd8ed1ab_2005
  r-evaluate-1.0.1-r44hc72bb7e_0
  r-fansi-1.0.6-r44hc1cf72c_1
  r-farver-2.1.2-r44h6170684_1
  r-fastmap-1.2.0-r44h6170684_1
  r-fontawesome-0.5.3-r44hc72bb7e_0
  r-forcats-1.0.0-r44hc72bb7e_2
  r-foreach-1.5.2-r44hc72bb7e_3
  r-foreign-0.8_87-r44hc1cf72c_1
  r-formatr-1.14-r44hc72bb7e_2
  r-fs-1.6.5-r44h21d2c02_0
  r-future-1.34.0-r44h785f33e_0
  r-future.apply-1.11.2-r44hc72bb7e_1
  r-gargle-1.5.2-r44h785f33e_1
  r-generics-0.1.3-r44hc72bb7e_3
  r-ggplot2-3.5.1-r44hc72bb7e_1
  r-gistr-0.9.0-r44hc72bb7e_3
  r-glmnet-4.1_8-r44h80bb91a_1
  r-globals-0.16.3-r44hc72bb7e_1
  r-glue-1.8.0-r44hdd76399_0
  r-googledrive-2.1.1-r44hc72bb7e_2
  r-googlesheets4-1.1.1-r44h785f33e_2
  r-gower-1.0.1-r44hc1cf72c_2
  r-gtable-0.3.6-r44hc72bb7e_0
  r-hardhat-1.4.0-r44hc72bb7e_1
  r-haven-2.5.4-r44h6170684_1
  r-here-1.0.1-r44hc72bb7e_3
  r-hexbin-1.28.5-r44h6e524ba_0
  r-highr-0.11-r44hc72bb7e_1
  r-hms-1.1.3-r44hc72bb7e_2
  r-htmltools-0.5.8.1-r44h6170684_1
  r-htmlwidgets-1.6.4-r44h785f33e_3
  r-httpcode-0.3.0-r44h37bb5a9_4
  r-httpuv-1.6.15-r44h6170684_1
  r-httr-1.4.7-r44hc72bb7e_1
  r-ids-1.0.1-r44hc72bb7e_4
  r-ipred-0.9_15-r44hc1cf72c_1
  r-irdisplay-1.1-r44hd8ed1ab_3
  r-irkernel-1.3.2-r44h785f33e_2
  r-isoband-0.2.7-r44h6170684_3
  r-iterators-1.0.14-r44hc72bb7e_3
  r-jquerylib-0.1.4-r44hc72bb7e_3
  r-jsonlite-1.8.9-r44hdd76399_0
  r-kernsmooth-2.23_24-r44h34e7ce4_1
  r-knitr-1.49-r44hc72bb7e_0
  r-labeling-0.4.3-r44hc72bb7e_1
  r-later-1.4.1-r44h21d2c02_0
  r-lattice-0.22_6-r44hc1cf72c_1
  r-lava-1.8.0-r44hc72bb7e_0
  r-lazyeval-0.2.2-r44hc1cf72c_5
  r-lifecycle-1.0.4-r44hc72bb7e_1
  r-listenv-0.9.1-r44hc72bb7e_1
  r-lobstr-1.1.2-r44h6170684_4
  r-lubridate-1.9.4-r44hdd76399_0
  r-magrittr-2.0.3-r44hc1cf72c_3
  r-maps-3.4.2.1-r44hdd76399_0
  r-mass-7.3_60.0.1-r44hc1cf72c_1
  r-matrix-1.6_5-r44h4469540_1
  r-memoise-2.0.1-r44hc72bb7e_3
  r-mgcv-1.9_1-r44h4469540_1
  r-mime-0.12-r44hc1cf72c_3
  r-modelmetrics-1.2.2.2-r44h6170684_4
  r-modelr-0.1.11-r44hc72bb7e_2
  r-munsell-0.5.1-r44hc72bb7e_1
  r-nlme-3.1_165-r44h5b510ea_1
  r-nnet-7.3_19-r44hc1cf72c_2
  r-numderiv-2016.8_1.1-r44hc72bb7e_6
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  r-packrat-0.9.2-r44hc72bb7e_1
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  requests-2.32.3-py313hd43f75c_1
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  xcb-util-image-0.4.0-h5c728e9_2
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  xorg-libsm-1.2.5-h0808dbd_0
  xorg-libx11-1.8.10-hca56bd8_1
  xorg-libxau-1.0.12-h86ecc28_0
  xorg-libxcomposite-0.4.6-h86ecc28_2
  xorg-libxcursor-1.2.3-h86ecc28_0
  xorg-libxdamage-1.1.6-h86ecc28_0
  xorg-libxdmcp-1.1.5-h57736b2_0
  xorg-libxext-1.3.6-h57736b2_0
  xorg-libxfixes-6.0.1-h57736b2_0
  xorg-libxi-1.8.2-h57736b2_0
  xorg-libxrandr-1.5.4-h86ecc28_0
  xorg-libxrender-0.9.12-h86ecc28_0
  xorg-libxt-1.3.1-h57736b2_0
  xorg-libxtst-1.2.5-h57736b2_3
  xorg-libxxf86vm-1.1.6-h86ecc28_0
  yaml-0.2.5-hfd63f10_0
  zeromq-4.3.5-h419075a_0
  zipp-3.21.0-py313hd43f75c_0
  zlib-1.3.1-h86ecc28_2
  zstd-1.5.6-h02f22dd_0


Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Everything found within the environment (/home/rstudio-server/anaconda3/envs/RStudio), including any conda environment configurations and any non-conda files, will be deleted. Do you wish to continue?
 (y/[n])? y
 
 (base) rstudio-server@Jetson:~$ conda env list
# conda environments:
#
base                  *  /home/rstudio-server/anaconda3